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Score matching is an approach to learning probability distributions parametrized up to a constant of proportionality (e.g. Energy-Based Models). The idea is to fit the score of the distribution, rather than the likelihood, thus avoiding the need to evaluate the constant of proportionality. While there's a clear algorithmic benefit, the statistical "cost'' can be steep: recent work by Koehler et al. 2022 showed that for distributions that have poor isoperimetric properties (a large Poincaré or log-Sobolev constant), score matching is substantially statistically less efficient than maximum likelihood. However, many natural realistic distributions, e.g. multimodal distributions as simple as a mixture of two Gaussians in one dimension -- have a poor Poincaré constant. In this paper, we show a close connection between the mixing time of a broad class of Markov processes with generator and an appropriately chosen generalized score matching loss that tries to fit pp. This allows us to adapt techniques to speed up Markov chains to construct better score-matching losses. In particular, ``preconditioning'' the diffusion can be translated to an appropriate ``preconditioning'' of the score loss. Lifting the chain by adding a temperature like in simulated tempering can be shown to result in a Gaussian-convolution annealed score matching loss, similar to Song and Ermon, 2019. Moreover, we show that if the distribution being learned is a finite mixture of Gaussians in d dimensions with a shared covariance, the sample complexity of annealed score matching is polynomial in the ambient dimension, the diameter of the means, and the smallest and largest eigenvalues of the covariance -- obviating the Poincaré constant-based lower bounds of the basic score matching loss shown in Koehler et al. 2022.more » « less
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Score matching is an approach to learning probability distributions parametrized up to a constant of proportionality (e.g. Energy-Based Models). The idea is to fit the score of the distribution, rather than the likelihood, thus avoiding the need to evaluate the constant of proportionality. While there's a clear algorithmic benefit, the statistical "cost'' can be steep: recent work by Koehler et al. 2022 showed that for distributions that have poor isoperimetric properties (a large Poincaré or log-Sobolev constant), score matching is substantially statistically less efficient than maximum likelihood. However, many natural realistic distributions, e.g. multimodal distributions as simple as a mixture of two Gaussians in one dimension -- have a poor Poincaré constant.more » « less
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Abstract Human mesenchymal stem cells (hMSCs) have gained traction in transplantation therapy due to their immunomodulatory, paracrine, immune‐evasive, and multipotent differentiation potential. The inherent heterogeneity of hMSCs poses a challenge for therapeutic treatments and necessitates the identification of robust biomarkers to ensure reproducibility in both in vivo and in vitro experiments. In this study, we utilized dielectrophoresis (DEP), a label‐free electrokinetic phenomenon, to investigate the heterogeneity of hMSCs derived from bone marrow (BM) and adipose tissue (AD). The electrical properties of BM‐hMSCs were compared to homogeneous mouse fibroblasts (NIH‐3T3), human fibroblasts (WS1), and human embryonic kidney cells (HEK‐293). The DEP profile of BM‐hMSCs differed most from HEK‐293 cells. We compared the DEP profiles of BM‐hMSCs and AD‐hMSCs and found that they have similar membrane capacitances, differing cytoplasm conductivity, and transient slopes. Inducing both populations to differentiate into adipocyte and osteoblast cells revealed that they behave differently in response to differentiation‐inducing cytokines. Histology and reverse transcription‐quantitative polymerase chain reaction (RT‐qPCR) analyses of the differentiation‐related genes revealed differences in heterogeneity between BM‐hMSCs and AD‐hMSCs. The differentiation profiles correlate well with the DEP profiles developed and indicate differences in the heterogeneity of BM‐hMSCs and AD‐hMSCs. Our results demonstrate that using DEP, membrane capacitance, cytoplasm conductivity, and transient slope can uniquely characterize the inherent heterogeneity of hMSCs to guide robust and reproducible stem cell transplantation therapies.more » « less
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We explore the properties of interferometric data from high-redshift 21 cm measurements using the Murchison Widefield Array (MWA). These data contain the redshifted 21 cm signal, contamination from continuum foreground sources, and radiometric noise. The 21 cm signal from the Epoch of Reionization (EoR) is expected to be highly Gaussian, which motivates the use of the power spectrum as an effective statistical tool for extracting astrophysical information. We find that foreground contamination introduces non-Gaussianity into the distribution of measurements and then use this information to separate Gaussian from the non-Gaussian signal. We present improved upper limits on the 21 cm EoR power spectrum from the MWA using a Gaussian component of the data, based on the existing analysis from C. D. Nunhokee et al. 2025. This is extracted as the best-fitting Gaussian to the measured data. Our best 2σ (thermal+sample variance) limit for 268 hr of data improves from (30.2 mK)2 to (23.0 mK)2 at z = 6.5 for the East–West polarization, and from (39.2 mK)2 to (21.7 mK)2 = 470 mK2 in North–South. The best limits at z = 6.8 (z = 7.0) improve to P < (25.9 mK)2 (P < (32.0 mK)2) and k = 0.18h Mpc‑1 (k = 0.21h Mpc‑1). Results are compared with realistic simulations, which indicate that leakage from foreground contamination is a source of the non-Gaussian behavior.more » « less
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This paper presents the spherically averaged 21 cm power spectrum derived from Epoch of Reionization (EoR) observations conducted with the Murchison Widefield Array (MWA). The analysis uses EoR0-field data, centered at (R.A. = 0h, decl. = ‑27∘), collected between 2013 and 2023. Building on the improved methodology described in C. M. Trott et al. (2024), we incorporate additional data quality control techniques introduced in C. D. Nunhokee (2020). We report the lowest-power-level limits on the EoR power spectrum at redshifts z = 6.5, z = 6.8, and z = 7.0. These power levels, measured in the east–west polarization, are (30.2)2 mK2 at k = 0.18 h Mpc‑1, (31.2)2 mK2 at k = 0.18 h Mpc‑1, and (39.1)2 mK2 at k = 0.21 h Mpc‑1, respectively. The total integration time amounts to 268 hr. These results represent the deepest upper limits achieved by the MWA to date and provide the first evidence of the heated intergalactic medium at redshifts z = 6.5 to 7.0.more » « less
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ABSTRACT The attenuation of Lyα photons by neutral hydrogen in the intergalactic medium (IGM) at z ≳ 5 continues to be a powerful probe for studying the epoch of reionization. Given a framework to estimate the intrinsic (true) Lyα emission of high-z sources, one can infer the ionization state of the IGM during reionization. In this work, we use the enlarged XQR-30 sample of 42 high-resolution and high signal-to-noise quasar spectra between $$5.8\lesssim \, z\lesssim \, 6.6$$ obtained with VLT/X-shooter to place constraints on the IGM neutral fraction. This is achieved using our existing Bayesian QSO reconstruction framework which accounts for uncertainties such as the: (i) posterior distribution of predicted intrinsic Lyα emission profiles (obtained via covariance matrix reconstruction of the Lyα and N v emission lines from unattenuated high-ionization emission line profiles; C iv, Si iv + O iv], and C iii]) and (ii) distribution of ionized regions within the IGM using synthetic damping wing profiles drawn from a 1.63 Gpc3 reionization simulation. Following careful quality control, we used 23 of the 42 available QSOs to obtain constraints/limits on the IGM neutral fraction during the tail-end of reionization. Our median and 68th percentile constraints on the IGM neutral fraction are: $$0.20\substack{+0.14 -0.12}$$ and $$0.29\substack{+0.14 -0.13}$$ at z = 6.15 and 6.35. Further, we also report 68th percentile upper limits of $$\bar{x}_{\mathrm{H\, {\small I}}{}} \lt 0.21$$, 0.20, 0.21, and 0.18 at z = 5.8, 5.95, 6.05, and 6.55. These results imply reionization is still ongoing at $$5.8\lesssim \, z\lesssim \, 6.55$$, consistent with previous results from XQR-30 (dark fraction and Lyα forest) along with other observational probes considered in the literature.more » « less
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Many mass spectrometry methods using various ionization sources provide bulk composition of airborne particles, but little is known about the surface species that play a major role in determining their physicochemical properties that impact air quality, climate, and health. The present work shows that the composition of surface layers of atmospherically relevant submicron organic particles can be probed without the use of an external ionization source. Solid dicarboxylic acid particles are used as models, with glutaric acid being the most efficient at generating ions. Coating with small diacids or products from α-pinene ozonolysis demonstrates that ions are ejected from the surface, providing surface molecular characterization of organic particles on the fly. This unique approach provides a path forward for elucidating the role of the surface in determining chemical and physical properties of particles, including heterogeneous reactions, particle growth, water uptake, and interactions with biological systems.more » « less
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